Sequence Analysis
Virus
Chikungunya
About PSSA
Pathogen Sequence Signature Analysis
Reference Sequences
Selected Virus:
Chikungunya
Selected Gene:
E1.
Name
Genotype
Year
Country
Sequence
HM045811-Ross
ECSA
1953
Tanzania (Africa)
TACGAACACGTAACAGTGATCCCGAACACGGTGGGAGTACCGTATAAGACTCTAGTCAACAGACCGGGCTACAGCCCCATGGTACTGGAGATGGAGCTACTGTCAGTCACTTTGGAGCCAACGCTATCGCTTGATTACATCACGTGCGAGTACAAAACCGTCATCCCGTCTCCGTACGTGAAATGCTGCGGTACAGCAGAGTGCAAGGACAAAAACCTACCTGACTACAGCTGTAAGGTCTTCACCGGCGTCTACCCATTTATGTGGGGCGGCGCCTACTGCTTCTGCGACGCTGAAAACACGCAATTGAGCGAAGCACATGTGGAGAAGTCCGAATCATGCAAAACAGAATTTGCATCAGCATACAGGGCTCATACCGCATCCGCATCAGCTAAGCTCCGCGTCCTTTACCAAGGAAATAACATCACTGTAACTGCCTATGCAAACGGCGACCATGCCGTCACAGTTAAGGACGCCAAATTCATTGTGGGGCCAATGTCTTCAGCCTGGACACCTTTCGACAACAAAATCGTGGTGTACAAAGGTGACGTTTACAACATGGACTACCCGCCCTTTGGCGCAGGAAGACCAGGACAATTTGGCGATATCCAAAGTCGCACGCCTGAGAGCAAAGACGTCTATGCTAACACACAACTGGTACTGCAGAGACCGGCTGCGGGTACGGTACACGTGCCATACTCTCAGGCACCATCTGGCTTTAAGTATTGGTTAAAAGAACGAGGGGCGTCGCTACAGCACACAGCACCATTTGGCTGCCAAATAGCAACAAACCCGGTAAGAGCGATGAACTGCGCCGTAGGGAACATGCCCATCTCCATCGACATACCGGATGCGGCCTTCACTAGGGTCGTCGACGCGCCCTCTTTAACGGACATGTCATGCGAGGTACCAGCCTGCACCCATTCCTCAGACTTTGGGGGCGTCGCCATTATTAAGTATGCAGCCAGCAAGAAAGGCAAGTGTGCGGTGCATTCGATGACCAACGCCGTCACTATCCGGGAAGCTGAGATAGAAGTTGAAGGGAATTCTCAGCTGCAAATCTCTTTCTCGACGGCCTTGGCCAGCGCCGAATTCCGCGTACAAGTCTGTTCTACACAAGTACACTGTGCAGCCGAGTGCCACCCTCCGAAGGACCACATAGTCAACTACCCGGCGTCACATACCACCCTCGGGGTCCAGGACATTTCCGCTACGGCGATGTCATGGGTGCAGAAGATCACGGGAGGTGTGGGACTGGTTGTCGCTGTTGCAGCACTGATTCTAATCGTGGTGCTATGCGTGTCGTTCAGCAGGCACTAA
HM045810
Asian
1958
Thailand (Asia)
TACGAACACGTAACAGTGATCCCGAACACGGTGGGAGTACCGTATAAGACTCTAGTCAACAGACCGGGCTACAGCCCCATGGTACTGGAGATGGAGCTTCTGTCAGTCACTTTGGAGCCAACGCTATCGCTTGATTACATCACGTGCGAGTATAAAACCGTCATCCCGTCTCCGTACGTGAAATGCTGCGGTACAGCAGAGTGCAAGGACAAGAGCCTACCTGATTACAGCTGTAAGGTCTTCACCGGCGTCTACCCATTCATGTGGGGCGGCGCCTACTGCTTCTGCGACACTGAAAATACGCAATTGAGCGAAGCACATGTGGAGAAGTCCGAATCATGCAAAACAGAATTTGCATCAGCATATAGGGCTCATACCGCATCCGCATCAGCTAAGCTCCGCGTCCTTTACCAAGGAAATAATGTTACTGTATCTGCCTATGCAAACGGCGACCATGCCGTCACAGTTAAGGACGCTAAATTCATTGTGGGGCCAATGTCTTCAGCCTGGACACCTTTCGACAATAAAATCGTGGTGTACAAAGGCGACGTCTACAACATGGACTACCCGCCCTTCGGCGCAGGAAGACCAGGACAGTTTGGCGACATCCAAAGTCGCACGCCTGAGAGCGAAGACGTCTATGCTAACACACAACTGGTACTGCAGAGACCGTCCGCGGGTACGGTGCACGTGCCGTACTCTCAGGCACCATCTGGCTTCAAGTATTGGCTAAAAGAACGAGGGGCGTCGCTGCAGCACACAGCACCATTTGGCTGTCAAATAGCAACAAACCCGGTAAGAGCGATGAACTGCGCCGTAGGGAACATGCCTATCTCCATCGACATACCGGACGCGGCCTTCACTAGGGTCGTCGACGCGCCATCTTTAACGGACATGTCGTGTGAGGTACCAGCCTGCACCCATTCCTCAGACTTTGGGGGCGTAGCCATCATTAAATATGCAGCCAGCAAGAAAGGCAAGTGTGCGGTGCATTCGATGACTAACGCCGTCACTATTCGGGAAGCTGAAATAGAAGTAGAAGGGAACTCTCAGTTGCAAATCTCTTTTTCGACGGCCCTAGCCAGCGCCGAATTCCGCGTACAAGTCTGTTCTACACAAGTACACTGTGCAGCCGAGTGCCATCCACCGAAAGACCATATAGTCAATTACCCGGCGTCACACACCACCCTCGGGGTCCAAGACATTTCCGCTACGGCGATGTCATGGGTGCAGAAGATCACGGGAGGTGTGGGACTGGTTGTCGCTGTTGCAGCACTGATCCTAATCGTGGTGCTATGCGTGTCGTTTAGCAGGCACTAA
HM045807
West African
1965
Nigeria (Africa)
TACGAACACGTAACAGTGATCCCGAACACGGTGGGAGTACCGTATAAGACTCTTGTCAACAGACCGGGTTACAGCCCCATGGTATTGGAGATGGAGCTACAATCGGTCACCTTGGAACCAACACTGTCACTTGACTACATCACGTGCGAGTACAAAACTGTCATCCCCTCCCCGTACGTGAAGTGCTGTGGTACAGCAGAGTGCAAGGACAAGAGCCTACCAGACTACAGCTGCAAGGTCTTTACTGGAGTCTACCCATTTATGTGGGGCGGCGCCTACTGCTTTTGCGACGCCGAAAATACGCAATTGAGCGAGGCACATGTAGAGAAATCTGAATCTTGCAAAACAGAGTTTGCATCGGCCTACAGAGCCCACACCGCATCGGCGTCGGCGAAGCTCCGCGTCCTTTACCAAGGAAACAACATTACTGTAGCTGCCTACGCTAACGGCGACCATGCCGTCACAGTAAAGGACGCCAAGTTTGTCGTGGGACCAATGTCCTCCGCCTGGACACCTTTTGACAACAAAATCGTGGTGTACAAAGGCGACGTCTACAACATGGACTACCCACCTTTTGGCGCAGGAAGACCAGGACAATTTGGTGACATTCAAAGTCGTACACCGGAAAGTAAAGACGTTTATGCCAACACTCAGTTGGTACTACAGAGGCCAGCAGCAGGCACGGTACATGTACCATACTCTCAGGCACCATCTGGCTTCAAGTATTGGCTGAAGGAACGAGGAGCATCGCTACAGCACACGGCACCGTTCGGTTGCCAGATTGCGACAAACCCGGTAAGAGCTGTAAATTGCGCTGTGGGGAACATACCAATTTCCATCGACATACCGGATGCGGCCTTTACTAGGGTTGTCGATGCACCCTCTGTAACGGACATGTCATGCGAAGTACCAGCCTGCACTCACTCCTCCGACTTTGGGGGCGTCGCCATCATCAAATATACAGCTAGCAAGAAAGGTAAATGTGCAGTACATTCGATGACCAACGCCGTTACCATTCGAGAAGCCGACGTAGAAGTAGAGGGGAATTCCCAGCTGCAAATATCCTTCTCAACAGCCTTGGCAAGCGCCGAGTTTCGCGTGCAAGTGTGCTCCACACAAGTACACTGCGCAGCCGCATGCCACCCTCCAAAGGACCACATAGTCAATTACCCAGCATCACACACCACCCTTGGGGTCCAGGATATATCCACAACGGCAATGTCTTGGGTGCAGAAGATTACGGGAGGAGTAGGATTAATTGTTGCTGTTGCTGCCTTAATTTTAATTGTGGTGCTATGCGTGTCGTTTAGCAGGCACTAA
3 registries
ITI Research Group
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